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BGA23
Sessions
Aligning whole genomes using Cactus
Annotating genomes the Ensembl way
Assembling Genomes with the VGP-Galaxy Pipeline
Assembling Mitogenomes from PacBio HiFi reads using MitoHiFi
Assess genome assemblies with Merqury
BUSCO - from QC to gene prediction and phylogenomics
Checking for cobionts in public genomes using BlobToolKit
Classifying Transposable Elements with Earl Grey TE
Compare whole genome assembly alignments using NCBI’s Comparative Genome Viewer (CGV)
EASEL software for eukaryotic structural and functional genome annotation
ENA data retrieval and EMBL-EBI's Biodiversity Portals
ENA Standards and Submission
Genome profiling using GenomeScope
gfastar - a tool suite to assist genome assembly
Introduction to Manual Curation - HiC and JBrowse
Introduction to NextFlow for genomics
OMA and OMArk for homology exploration and gene annotation quality control
Pangenome Assembly and Assessment using Minigraph and Bandage
Querying genome metadata and sequencing projects using GoaT
Scalable telomere-to-telomere assembly with hifiasm
Searching and Downloading Genome Data using NCBI Datasets
Starting a comparative genome study from CNGBdb-datasets, analysis platform, and spatial transcriptomics database
The Treeval pipeline Generating evidence for manual curation
Understanding k-mers and ploidy using Smudgeplot
Visualising genome assembly cobionts by running BlobToolKit locally
BGA23
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BGA24
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Introduction to Manual Curation - HiC and JBrowse
TreeVal-Generating evidence for manual curation
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Tag: #Assessment
Tag: #Assessment
1 item with this tag.
May 27, 2024
Pangenome Assembly and Assessment using Minigraph and Bandage
#BGA23/sessions
#Assessment
#Bandage
#Minigraph
#Workshop